Existence and Exponential Stability of Solutions for Stochastic Cellular Neural Networks with Piecewise Constant Argument

By using the concept of differential equations with piecewise constant argument of generalized type, a model of stochastic cellular neural networks with piecewise constant argument is developed. Sufficient conditions are obtained for the existence and uniqueness of the equilibrium point for the addressed neural networks. pth moment exponential stability is investigated by means of Lyapunov functional, stochastic analysis, and inequality technique. The results in this paper improve and generalize some of the previous ones. An example with numerical simulations is given to illustrate our results

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This paper investigates the problem of pth moment exponential stability for a class of stochastic neural networks with time-varying delays and distributed delays under nonlinear impulsive perturbations. By means of Lyapunov functionals, stochastic analysis and differential inequality technique, criteria on pth moment exponential stability of this model are derived. The results of this paper are completely new and complement and improve some of the previously known results (Stamova and Ilarionov (2010), Zhang et al. (2005), Li (2010), Ahmed and Stamova (2008), Huang et al. (2008), Huang et al. (2008), and Stamova (2009)). An example is employed to illustrate our feasible results

A study of starch resources with high-amylose content from five Chinese mutant banana species

Investigation on staple crop starch of new species has been becoming the research focus of scholars at present. Based on this, the physicochemical properties and microstructural characteristics of starches isolated from Chinese mutant Musa acuminata Colla acuminata and double balbisiana (MA), Musa double acuminata cv. Pisang Mas (MAM), Musa acuminata cv. Pisang Awak (MAA), and Musa Basjoo Siebold (MBS), and Musa double acuminata and balbisiana-Prata (MAP) were investigated. Results exhibited that all starches exhibited high content of amylose (34.04–42.59%). According to the particle size, they were divided into medium (MA, MAM) (14.54–17.71 μm) and large (MAA, MBS, MAP) (23.01–23.82 μm) group. The medium group with A-type crystallization showed higher peak viscosity (PV), final viscosity, gel fracturability and gel hardness. For large group with B-type crystallization, the compact particle morphology, higher degree of crystallinity, short range order, gelatinization enthalpy, pasting temperature, lower porosity, water absorption capacity (WAC) and oil absorption capacity were found. In addition, the medium group with higher PV and gel hardness could be used as food thickening or gelling agents. The large group with higher Rc, short-range order, lower porosity and WAC could be potential to become raw material for resistant starch. All results showed the amylose content, had significant effect on the microstructure and physicochemical properties of starch samples. Outcomes in this investigation might provide a basis of theoretical application for industrial food production

The impact of the atmospheric turbulence-development tendency on new particle formation : a common finding on three continents

A new mechanism of new particle formation (NPF) is investigated using comprehensive measurements of aerosol physicochemical quantities and meteorological variables made in three continents, including Beijing, China; the Southern Great Plains site in the USA; and SMEAR II Station in Hyytiala, Finland. Despite the considerably different emissions of chemical species among the sites, a common relationship was found between the characteristics of NPF and the stability intensity. The stability parameter (zeta = Z/L, where Z is the height above ground and L is the Monin-Obukhov length) is found to play an important role; it drops significantly before NPF as the atmosphere becomes more unstable, which may serve as an indicator of nucleation bursts. As the atmosphere becomes unstable, the NPF duration is closely related to the tendency for turbulence development, which influences the evolution of the condensation sink. Presumably, the unstable atmosphere may dilute pre-existing particles, effectively reducing the condensation sink, especially at coarse mode to foster nucleation. This new mechanism is confirmed by model simulations using a molecular dynamic model that mimics the impact of turbulence development on nucleation by inducing and intensifying homogeneous nucleation events.Peer reviewe

Multikingdom interactions govern the microbiome in subterranean cultural heritage sites

9 páginas.- 5 figuras.- 66 referencias.- Data Availability. The amplicon sequences, shotgun metagenomics, and screened Actinobacteria strain sequences reported in this article have been deposited in the NCBI BioProject and GenBank databases (accession nos. PRJNA721777, PRJNA745276, and OL444665 to OL444682, respectively). All other study data are included in the article and/or supporting informationMicrobial biodeterioration is a major concern for the conservation of historical cultural relics worldwide. However, the ecology involving the origin, composition, and establishment of microbiomes on relics, once exposed to external environments, is largely unknown. Here, we combined field surveys with physiological assays and biological interaction experiments to investigate the microbiome in the Dahuting Han Dynasty Tomb, a Chinese tomb with more than 1,800 y of history, and its surrounding environments. Our investigation finds that multikingdom interactions, from mutualism to competition, drive the microbiome in this subterranean tomb. We reveal that Actinobacteria, Pseudonocardiaceae are the dominant organisms on walls in this tomb. These bacteria produce volatile geosmin that attracts springtails (Collembola), forming an interkingdom mutualism, which contributes to their dispersal, as one of the possible sources into the tomb from surrounding environments. Then, intrakingdom competition helps explain why Pseudonocardiaceae thrive in this tomb via the production of a mixture of cellulases, in combination with potential antimicrobial substances. Together, our findings show that multikingdom interactions play an important role in governing the microbiomes that colonize cultural relics. This knowledge is integral to understanding the ecological and physiological features of relic microbiomes and to supporting the relics’ long-term conservation.This work was supported by the National Key R&D Program (2019YFC1520700), the National Natural Science Foundation of China (42177297), Chinese Academy of Sciences (CAS) Strategic Priority Research Program Grant XDA28010302, and the Youth Innovation Promotion Association, CAS (Member No. 2014271). M.D.-B. is supported by a Ramón y Cajal Grant (RYC2018-025483-I), a project from the Spanish Ministry of Science and Innovation (PID2020-115813RA-I00), and Project Plan Andaluz de Investigación, Desarrollo e Innovación 2020 from the Junta de Andalucía (P20_00879).Peer reviewe

Transcriptome and UPLC-MS/MS reveal mechanisms of amino acid biosynthesis in sweet orange ‘Newhall’ after different rootstocks grafting

Sweet orange ‘Newhall’ (C. sinensis) is a popular fruit in high demand all over the world. Its peel and pulp are rich in a variety of nutrients and are widely used in catering, medicine, food and other industries. Grafting is commonly practiced in citrus production. Different rootstock types directly affect the fruit quality and nutritional flavor of citrus. However, the studies on citrus metabolites by grafting with different rootstocks are very limited, especially for amino acids (AAs). The preliminary test showed that there were significant differences in total amino acid content of two rootstocks (Poncirus trifoliata (CT) and C. junos Siebold ex Tanaka (CJ)) after grafting, and total amino acid content in the peel was higher than flesh. However, the molecular mechanism affecting amino acid differential accumulation remains unclear. Therefore, this study selected peel as the experimental material to reveal the amino acid components and differential accumulation mechanism of sweet orange ‘Newhall’ grafted with different rootstocks through combined transcriptome and metabolome analysis. Metabolome analysis identified 110 amino acids (AAs) and their derivatives in sweet orange ‘Newhall’ peels, with L-valine being the most abundant. L-asparagine was observed to be affected by both developmental periods and rootstock grafting. Weighted gene co-expression network analysis (WGCNA) combined with Redundancy Analysis (RDA) revealed eight hub structural genes and 41 transcription factors (TFs) that significantly influenced amino acid biosynthesis in sweet orange ‘Newhall’ peels. Our findings further highlight the significance of rootstock selection in enhancing the nutritional value of citrus fruits and might contribute to the development of functional citrus foods and nutritional amino acid supplements

The <i>Sinocyclocheilus</i> cavefish genome provides insights into cave adaptation

BACKGROUND: An emerging cavefish model, the cyprinid genus Sinocyclocheilus, is endemic to the massive southwestern karst area adjacent to the Qinghai-Tibetan Plateau of China. In order to understand whether orogeny influenced the evolution of these species, and how genomes change under isolation, especially in subterranean habitats, we performed whole-genome sequencing and comparative analyses of three species in this genus, S. grahami, S. rhinocerous and S. anshuiensis. These species are surface-dwelling, semi-cave-dwelling and cave-restricted, respectively. RESULTS: The assembled genome sizes of S. grahami, S. rhinocerous and S. anshuiensis are 1.75 Gb, 1.73 Gb and 1.68 Gb, respectively. Divergence time and population history analyses of these species reveal that their speciation and population dynamics are correlated with the different stages of uplifting of the Qinghai-Tibetan Plateau. We carried out comparative analyses of these genomes and found that many genetic changes, such as gene loss (e.g. opsin genes), pseudogenes (e.g. crystallin genes), mutations (e.g. melanogenesis-related genes), deletions (e.g. scale-related genes) and down-regulation (e.g. circadian rhythm pathway genes), are possibly associated with the regressive features (such as eye degeneration, albinism, rudimentary scales and lack of circadian rhythms), and that some gene expansion (e.g. taste-related transcription factor gene) may point to the constructive features (such as enhanced taste buds) which evolved in these cave fishes. CONCLUSION: As the first report on cavefish genomes among distinct species in Sinocyclocheilus, our work provides not only insights into genetic mechanisms of cave adaptation, but also represents a fundamental resource for a better understanding of cavefish biology. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12915-015-0223-4) contains supplementary material, which is available to authorized users

Genome Assembly for a Yunnan-Guizhou Plateau “3E” Fish, Anabarilius grahami (Regan), and Its Evolutionary and Genetic Applications

A Yunnan-Guizhou Plateau fish, the Kanglang white minnow (Anabarilius grahami), is a typical “3E” (Endangered, Endemic, and Economic) species in China. Its distribution is limited to Fuxian Lake, the nation’s second deepest lake, with a significant local economic value but a drastically declining wild population. This species has been evaluated as VU (Vulnerable) in the China Species Red List. As one of the “Four Famous Fish” in Yunnan province, the artificial breeding has been achieved since 2003. It has not only re-established its wild natural populations by reintroduction of the artificial breeding stocks, but also brought a wide and popular utilization of this species to the local fish farms. A. grahami has become one of the main native aquaculture species in Yunnan province, and the artificial production has been emerging in steady growth each year. To promote the conservation and sustainable utilization of this fish, we initiated its whole genome sequencing project using an Illumina Hiseq2500 platform. The assembled genome size of A. grahami is 1.006 Gb, accounting for 98.63% of the estimated genome size (1.020 Gb), with contig N50 and scaffold N50 values of 26.4 kb and 4.41 Mb, respectively. Approximately about 50.38% of the genome was repetitive. A total of 25,520 protein-coding genes were subsequently predicted. A phylogenetic tree based on 4,580 single-copy genes from A. grahami and 18 other cyprinids revealed three well-supported subclades within the Cyprinidae. This is the first inter-subfamily relationship of cyprinids at genome level, providing a simple yet useful framework for understanding the traditional but popular subfamily classification systems. Interestingly, a further population demography of A. grahami uncovered a historical relationship between this fish and Fuxian Lake, suggesting that range expansion or shrinkage of the habitat has had a remarkable impact on the population size of endemic plateau fishes. Additionally, a total of 33,836 simple sequence repeats (SSR) markers were identified, and 11 loci were evaluated for a preliminary genetic diversity analysis in this study, thus providing another useful genetic resource for studying this “3E” species